Package: DSOpal 1.5.0

Yannick Marcon

DSOpal: 'DataSHIELD' Implementation for 'Opal'

'DataSHIELD' is an infrastructure and series of R packages that enables the remote and 'non-disclosive' analysis of sensitive research data. This package is the 'DataSHIELD' interface implementation for 'Opal', which is the data integration application for biobanks by 'OBiBa'. Participant data, once collected from any data source, must be integrated and stored in a central data repository under a uniform model. 'Opal' is such a central repository. It can import, process, validate, query, analyze, report, and export data. 'Opal' is the reference implementation of the 'DataSHIELD' infrastructure.

Authors:Yannick Marcon [aut, cre], Becca Wilson [ctb], OBiBa group [cph]

DSOpal_1.5.0.tar.gz
DSOpal_1.5.0.zip(r-4.7-any)DSOpal_1.5.0.zip(r-4.6-any)DSOpal_1.5.0.zip(r-4.5-any)
DSOpal_1.5.0.tgz(r-4.6-any)DSOpal_1.5.0.tgz(r-4.5-any)
DSOpal_1.5.0.tar.gz(r-4.7-any)DSOpal_1.5.0.tar.gz(r-4.6-any)
DSOpal_1.5.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
DSOpal/json (API)

# Install 'DSOpal' in R:
install.packages('DSOpal', repos = c('https://datashield.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/datashield/dsopal/issues

Pkgdown/docs site:https://datashield.github.io

Datasets:

On CRAN:

Conda:

4.57 score 245 scripts 603 downloads 29 exports 42 dependencies

Last updated from:07deca654e. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK126
source / vignettesOK172
linux-releaseOK116
macos-releaseOK185
macos-oldrelOK156
windows-develOK83
windows-releaseOK69
windows-oldrelOK64
wasm-releaseOK110

Exports:dsAggregatedsAssignExprdsAssignResourcedsAssignTabledsConnectdsDisconnectdsFetchdsGetInfodsHasResourcedsHasSessiondsHasTabledsIsAsyncdsIsCompleteddsIsReadydsKeepAlivedsListMethodsdsListPackagesdsListProfilesdsListResourcesdsListSymbolsdsListTablesdsListWorkspacesdsRestoreWorkspacedsRmSymboldsRmWorkspacedsSaveWorkspacedsSessiondsStateMessageOpal

Dependencies:askpassbitbit64clicliprcpp11crayoncurldplyrDSIforcatsgenericsgluehavenhmshttrjsonlitelabelledlifecyclemagrittrmimeopalropensslpillarpkgconfigprettyunitsprogresspurrrR6readrrlangstringistringrsystibbletidyrtidyselecttzdbutf8vctrsvroomwithr

Readme and manuals

Help Manual

Help pageTopics
Aggregate datadsAggregate,OpalConnection-method
Assign the result of an expressiondsAssignExpr,OpalConnection-method
Assign a resourcedsAssignResource,OpalConnection-method
Assign a tabledsAssignTable,OpalConnection-method
Connect to a Opal serverdsConnect,OpalDriver-method
Disconnect from a Opal serverdsDisconnect,OpalConnection-method
Fetch the resultdsFetch,OpalResult-method
Get result infodsGetInfo,OpalResult-method
Verify Opal resourcedsHasResource,OpalConnection-method
Check remote R session existsdsHasSession,OpalConnection-method
Verify Opal tabledsHasTable,OpalConnection-method
Opal asynchronous supportdsIsAsync,OpalConnection-method
Get whether the operation is completeddsIsCompleted,OpalResult-method
Get whether the remote R session is up and runningdsIsReady,OpalSession-method
Keep connection with a Opal server alivedsKeepAlive,OpalConnection-method
List methodsdsListMethods,OpalConnection-method
List packagesdsListPackages,OpalConnection-method
List profilesdsListProfiles,OpalConnection-method
List Opal resourcesdsListResources,OpalConnection-method
List R symbolsdsListSymbols,OpalConnection-method
List Opal tablesdsListTables,OpalConnection-method
List workspacesdsListWorkspaces,OpalConnection-method
Restore workspacedsRestoreWorkspace,OpalConnection-method
Remove a R symboldsRmSymbol,OpalConnection-method
Remove a workspacedsRmWorkspace,OpalConnection-method
Save workspacedsSaveWorkspace,OpalConnection-method
Create a remote R sessiondsSession,OpalConnection-method
Get the remote R session state messagedsStateMessage,OpalSession-method
DataSHIELD login data filelogindata.opal.demo
Create a Opal driverOpal